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allenccf

Tools to work with Allen Inst CCF data in matlab

analysis-tools

Code for reading data saved by the Open Ephys GUI

barcode_sync

Use random sync pulses to map times from recording to another

csc-eeg-tools

Set of matlab functions for EEG io, preprocessing, analysis from the Center for Sleep and Consciousness, University of Wisconsin (csc)

ece-env

ecephys

Python extracellular electrophysiology tools

ecephys_project_template

Use as template for CSC-UW ecephys projects relying on ecephys_project_manager

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

emg_from_lfp

Derive EMG from LFP through correlation of high-frequency activity.

ephyviewer

Simple viewers for ephys signals, events, video and more

graphiit

Personal utilities for building PyPhi networks that need to be large and/or malleable.

hypnogram

Simple hypnogram utilities in Python

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

iit-pseudocode

Pseudocode for the major algorithms of Integrated Information Theory

inceptiontime

InceptionTime: Finding AlexNet for Time Series Classification

kcsd-python

Kernel Current Source Density

kilosort

Fast spike sorting with drift correction for up to a thousand channels

marshall_et_al_2024

A Mathematical Framework for Macro Units with Intrinsic Cause-Effect Power

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

on_off_detection

Detect ON- and OFF-periods from single-unit activity

sglxarray

Utilities for loading SpikeGLX data in xarray format.

sleepscore

Load and sleepscore neuropixel data with visbrain's Sleep module

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

swa-matlab

Sleep Wave Analysis - an open source toolbox for matlab to score and analyse various waveforms in sleep EEG data

tdt_xarray

Utilities for loading TDT data in xarray format

wisc_ecephys_tools