Computational Systems Biology Laboratory's Projects
Co-Expression Module Identification Tool (CEMiTool) official repository
Shiny App for decision making based on this blogpost (https://medium.com/@tomaspueyo/coronavirus-act-today-or-people-will-die-f4d3d9cd99ca)
This package is intended to unify the most commonly used functions in the CSBL.
Repository containing all scripts and files necessary to reproduce the analyses and figures in the paper "Evolution of knowledge on genes of inflammatory, infectious and psychiatric diseases: meta-research of the scientific literature using IBM Watson for Drug Discovery."
Repository for R package to perform Fast Correlation Based Filtering (Information Theory based feature selection) with applications to single-cell and bulk to transcriptomic analysis set ups.
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.
Repository containing the scripts used to produce the results reported in the paper "Drug repositioning for chronic inflammatory diseases using a network medicine approach"
Gene expression meta-analysis visualization tool
Fast network visualization with WebGL
The scripts in this repository perform the following tasks necessary for drug repositioning using Open Targets:
Bioinformatics pipelines
R package for calculating the literature score for a given gene / gene list in relation to the biomedical literature.
Series of skills for laboratory use of Alexa Voice User Interface implemented using Node.js
Script to perform drug repositioning using Watson for Drug Discovery data