saurav kumar's Projects
ABNER is a widely used named entity recognition (NER) tool. AOPbot provides seamless integration with ABNER through a dedicated Python wrapper.
AI4Omics Practical session
A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.
A tool to help users to establish adverse outcomes pathways.
Network analysis platform for evidence gathered using AOP-bot
A query engine to retrive information from AOP wiki graph database.
ARCHER2 Python course
A curated list of Cheminformatics libraries and software.
š„ š š¹ š A curated list of command line apps
Paper list of KBQA
:sunglasses: A curated list of awesome Molecular Dynamics libraries, tools and software.
A curated list of resources for pre-training on graphs.
A version of BabyAGI with numpy instead of pinecone and an evaluation agent to check success criteria
Classical Machine Learning approach for drug penetration across BBB
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
This is a public repo for codes and resources of BioCaster 2021: http://www.biocaster.org
Workshops presented by the Gladstone Bioinformatics Core
Tools for curating biomedical training data for large-scale language modeling
This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).
BotAnnotator is combination of different NER tools for biomedical domain.
This corpus contains 10 PubMed Central full text annotated in the stem cell domain.
Analyze molecule from your browser extension
Message Passing Neural Networks for Molecule Property Prediction
A complete computer science study plan to become a software engineer.