creggian Goto Github PK

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

anatomy-of-rdd

bcpanel

High-level library for binary classification tasks. In one line, it is possible to call several machine learning methods performing cross-validation and feature selection. (Work In Progress)

beautiful-jekyll

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

bigbio

convading

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

creggian-python

Python module with utility functions. I mainly use it for pyspark

creggian.github.io

Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.

csl-styles

Repository of CSL citation styles.

dsa-repo-test-01-16

dsa-repo-test-01-16

expecto

fastq-trim-extra

flutter

Flutter makes it easy and fast to build beautiful mobile apps.

git

This repository contains the course material for the Git course

hackyourfuture-git-branch

hyf-belgium-website

laravel-fashionshop

lazy.subset

R function to load in memory only subsets of large dataset using awt

mahout

Implementation of mRMR feature selection algorithm in MapReduce. Distributed as Java library for Mahout

ngs-playground

Collection of small exercises to assess the behaviour of NGS tools in specific settings.

nlp-with-python

notebook-pyspark-feature-selection

A collection of Jupyter notebooks to perform feature selection in Spark (python)

pasapipeline

PASA software

phd-thesis

Dissertation, data and scripts used in my PhD thesis

phraug2

A new version of phraug, which is a set of simple Python scripts for pre-processing large files

pipeline-standardization

profile

Read, Manipulate, and Write Profiler Data

python-chess

A pure Python chess library with move generation and validation, PGN parsing and writing, Polyglot opening book reading, Gaviota tablebase probing, Syzygy tablebase probing and UCI engine communication

qiaseq-smcounter-v2