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Craig Marsh (aka Cyril)'s Projects

adcomp icon adcomp

AD computation with Template Model Builder (TMB)

cabm icon cabm

CABM (C++ Agent Based Model)

casal2tostan icon casal2tostan

An rlibrary that I will convert csl2 files to STAN models for the purpose of research

logisticnormalll icon logisticnormalll

A repo that looks at implementing the logistic normal negative log likelihood for composition data

r4casal2 icon r4casal2

R package for summarising Casal2 models

sablefishresearch icon sablefishresearch

A repository to host a Gitbook that documents my Alaskan sablefish research

sam icon sam

Git page for SAM R-package

sna1 icon sna1

A model of the SNA1 fishery

spatialsablefishassessment icon spatialsablefishassessment

A R package that contains TMB stock assessment models and auxiliary functions. Initially it was built for Sablefish, but could be fit to any stock that exhibits sexual dimorphism, has two fishing fleets and generalized number of spatial regions.

spict icon spict

Surplus Production in Continuous-Time

spm icon spm

Spatial Population Model

startingconditionsimulation icon startingconditionsimulation

A simple simulation to investigate the starting condition assumption for age-structured stock assessment models and its effect on reference points

systematicsurvey icon systematicsurvey

Simple R package that has population estimators for two-dimensional systematic surveys.

usingstancpp icon usingstancpp

A little stand alone repo for testing how to use Stan in a C++ standalone exe

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