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Corey Flynn's Projects

coffeeshop icon coffeeshop

All you need to create a VM for Connectivity Map analysis using vagrant and virtualbox

diffuse icon diffuse

3D scatter plots using Babylon.js and node-webkit. Useful for Visualization of 3D diffusion embeddings of Connectivity Map Pharmacological Class data

druid icon druid

Apache Druid: a high performance real-time analytics database.

f3 icon f3

Fitness tracker dashboard for Slow White Ultimate

geneexpressmap icon geneexpressmap

GeneExpressMap makes possible the rapid, three-dimensional analysis of multiplex fluorescent whole mount in situ hybridizartion (F-WMISH) data at single cell resolution. It relies on the assignment of F-WMISH signal to individual cells based on the proximity of cytoplasmic hybridization signal to cell nuclei. GeneExpress3D greatly extends the power of multiplex F-WMISH for analyzing patterns of gene expression and is a powerful tool for gene regulatory network analysis.

janus icon janus

Scratch code for pair programming exercises

pertinfo icon pertinfo

iOS app for finding perturbagens profiled in the Connectivity Map project at the Broad Institute

pertsearch icon pertsearch

iOS app for Connectivity Map purturbagen lookup

pushit icon pushit

Logging example with express, winston, and slack

querygravity icon querygravity

What would happen if we looked at Connectivity Map queries as a dynamic exploration of genomic space? What parts of the genome do we really care about?

realtimeusa icon realtimeusa

An example implementation of real time data views on a US map

runway icon runway

framework for generating styleguide pages based on sass and polymer components

seqviz icon seqviz

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

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