cooplab Goto Github PK

admixcov_data_simon_coop

Variance decomposition analysis of UK and Bohemian human ancient DNA data

admixcov_sims_simon_coop

bees

Genomic project analyzing admixture in Africanized honey bees

buffalo_coop_selection_covariances

confoundedgwas_veller_coop

construct

method for modeling continuous and discrete population genetic structure

convergence

cooplab.github.io

github pages for cooplab

dmc

Distinguishing among modes of convergent adaptation using population genomic data

euroibd

Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.3815

eve102

genealogy

genetic_ancestors

Scripts to generate simulations and plots used in blog posts on genetic and genealogical ancestry gcbias.org/category/genetic-genealogy/ . These scripts were written over a couple of afternoons and are by no means optimal ways of constructing these quantities. Hopefully they will be of use.

height_over_time

European height over time using data from data from Hatton and Bray Long Run Trends in the Heights of European Men, 19th-20th Centuries

hilo

Scripts related to publication: Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J (2021). Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. bioRxiv. https://www.biorxiv.org/content/10.1101/2021.03.05.434040v1

labdocs

A place for lab related documents

ldsim

An R/shiny simulation app for teaching linkage disequilibrium

mathii.github.com

Website

old_geology_mice_code

polygenic_outcomes_sexual_antagonism_muralidhar_coop

Simulation code for pre-print "Polygenic outcomes of sexually antagonistic selection" (doi: 10.1101/2023.03.02.530911)

polygenicadaptationcode

My copy of jjberg2's code, see Jeremy's code for most upto date version.

popgen-notes

Population genetics notes

popgen_eve102_2012

Pdfs of slides from 2018 popgen course

popgen_teaching_code

pophistory-tutorial

Tutorial on using popular tools for learning about population history

py-admixcov-simon_coop

Python functions module for the admixture covariance project

qpc-maize

r_popgen_notes_code

rhps_coalescent

Code associated with the paper "Reconstructing the history of polygenic scores using coalescent trees" by M.D. Edge and G. Coop.

selection-against-introgression_groh_coop