cnyuanh Goto Github PK

16s-rdna-dada2-pipeline

dada2 Nextflow pipeline

2015-shell-genomics

Lesson for the shell for genomics

5years

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

aiphylo

machine learning for phylogenetics

algorithms-for-dna-sequencing

Codes from Coursera's course Algorithms for DNA sequencing, part of genomic data science specialization offered by Johns Hopkins University

all-modules-archive

alv

A console-based alignment viewer

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

angsd

Program for analysing NGS data.

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

artistoo

CPM implementation in pure JavaScript

assseq

Assseq

astral

Accurate Species TRee ALgorithm

atlas

ATLAS - Three commands to start analysing your metagenome data

au-bootcamp-git-intro

Git introduction for Auburn University Bioinformatics Bootcamp

augur

Pipeline components for real-time phylodynamic analysis

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

babette

babette is an R package to work with BEAST2

bachelorbfx

ipython notebooks for Bachelor course bioinformatics

bacoca

BaCoCa (Base Composition Calculator) is designed to perform multiple statistical analyses on multiple nucleotide and amino-acid sequence alignments. The results of the BaCoCa analyses can be used for a detailed and statistical comprehensive data evaluation. Furthermore, the results can help to identify phylogenetic sequence biases which can lead to incorrect tree reconstructions. The program can handle hundreds of user specified gene and taxon partitions of a single sequence input file in one process run. BaCoCa is a command-line driven program written in PERL and works on WindowsPCs, Macs and Linux operating systems. Therefore, it can be easily integrated into automatic pipeline processes of phylogenomic studies.

bayesian-modelling-in-python

A python tutorial on bayesian modeling techniques (PyMC3)

bayesian-stats-modelling-tutorial

How to do Bayesian statistical modelling using numpy and PyMC3

bayesian-stats-with-r

Material for a workshop on Bayesian stats with R

bayesian_tutorial

Tutorial on Bayesian phylogenetic analysis

bcb546x-spring2017

Course materials and organization

bda_course_aalto

Bayesian Data Analysis course at Aalto

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

binderhub

Run your code in the cloud, with technology so advanced, it feels like magic!