Proteomics at the Spanish National Center of Cardiovascular Research's Projects
Scripts that create databases used by iSanXoT
Comet-PTM, branch of Comet MS/MS
Data converter from a tab-separated text file to a QuiXML file to be used in QuiXoT.
R script that extracts Gene names from the FASTA identifiers for each row in an IDq file.
Snakemake workflow developed by the Proteomic Unit in CNIC
Stand-alone application that executes workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments, based on SanXoT integrations.
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
Software used in combination with MascotToQuiXML to import spectral data from Mascot's MGF files to be used in QuiXoT by converting them into binStack binary files.
Set of Jupyter Notebooks, scripts and libraries to perform the multiomics integration.
Core for the next-Launcher: backend and frontend systems
Web application for the next-Launcher system
Nextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
Modules for nextflow pipelines
nf-PTM-compass is a Nextflow pipeline that enhances the identification and quantification of Post-Translational Modifications (PTMs).
Nextflow for SOLVER pipeline
Nextflow for ReFrag pipeline
nf-SearchEngine is a Nextflow pipeline that execute the MSFragger search engine for the peptide identification.
Nextflow for SHIFTS pipeline
Peptidoform Annotation Tool for proteomic analysis
A SEQUEST protein identification validator program created to calculate the probability of random peptide matching and the FDR when a large collection of MS2 spectra is searched against a database using SEQUEST.
R programn that calculate the probability of random peptide matching and the FDR when a large collection of MS2 spectra is searched against a database using SEQUEST