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atomide

atomIDE

awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

awesome-programming-books

经典编程书籍大全，涵盖：计算机系统与网络、系统架构、算法与数据结构、前端开发、后端开发、移动开发、数据库、测试、项目与团队、程序员职业修炼、求职面试等

gala

Automatic segmentation of electron microscopy volumes

helloworld-

imod

IMOD - Boulder Laboratory for 3-D Electron Microscopy of Cells

javapyr

my program book including Python, Java, and R.

learn_cryoem_math

linux_config

My linux config file. .bash_profile .alias bin .vimrc etc.

matlab-storm

GUIs and functions for analyzing STORM data in MATLAB

motioncorr

motion correction for movies recorded using direct electron detectors

myunixconfig

my Unix configuration file including Mac, Linux

notero

A Zotero plugin for syncing items into Notion

palm-siever

Visualization and analysis platform for single-molecule localization microscopy

plotly.py

the browser-based graphing library for python

pyqstem

A Python interface to the electron microscopy simulation program QSTEM

ray

Automatic segmentation of electron microscopy volumes

rdocumentation

Integrate R with http://www.Rdocumentation.org

relion

Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

relion-1

Image-processing software for cryo-electron microscopy

shellscripts

shellscripts

stitchem

A set of tools for serial electron microscopy image stitching and alignment.

storm-analysis

Zhuang lab STORM movie analysis code

topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

xmipp

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.