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agroschisto

agschistoverlap

Project identifying areas of SSA where overlap of agrochemical pollution and schistosomiasis transmission is likely to occur

basicskavli18

Introductory PhD course in Statistics for STEM and Humanities

cmhoove14.github.io

congregate-staff-testing

Investigating influence of staff testing on prevention of resident outbreaks in congregate facilities

ct_dynamics_preprint

Code required to regenerate the figures and analyses in Hay & Kennedy-Shaffer et al.

ddntd

Optimal control theory for neglected tropical diseases subject to density dependence

eliminationfeasibility

Code repository for manuscript on model-free estimation of the elimination feasibility of schistosomiasis

historical-data

Clean longitudinal, facility-level data of COVID-19 infections and deaths in U.S. prisons and jails.

hp3

Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975

intravillage_ecuador

Repository used for processing, exploration, and analysis of Ecuador intravillage household data

lemma

Local Epidemic Modeling for Management & Action (LEMMA)

lemmaabmv4

matrixbasedabm

miscellaneous

Random projects and attempts at different things

nimbios

Code repository and sharing for NIMBioS workshop investigating optimal control of NTDs

optimal_control

prawn_fisheries_public_health

Code repository for project connecting prawn fisheries model to schisto epidemiological model

prediction_rt_coivd19

Source code accompanying Jung et al. "Predicting the effective reproduction number of COVID-19: Inference using human mobility, temperature, and risk awareness".

rbbs

R package to import USGS' BBS data

reff_interventions

Repository for theoretical analysis of the effects of interventions on the elimination of helminthic parasites

rsynthpops

rwrfhydro

A community-contributed tool box for managing, analyzing, and visualizing WRF Hydro (and HydroDART) input and output files in R.

sars-cov2

schistodynagg

Code Repository for exploration of schistosomiasis aggregation dynamics

seir-covid19

sichuan_lepto

Code repository investigating patterns of leptosporosis data in Sichuan province, China

vaxequityeval

Code and data repository for project evaluation the impact of California's 2021 vaccine equity allocation policy