allele

Documentation for data model of ClinGen

allele-registry-use-cases

Description and support material for a global allele registry

anyvar

[in development] Proof-of-Concept variation translation, validation, and registration service

architecture

berglab-php

PHP docker image configuration

brand-and-content-delivery

The REPO is intended to serve limited amounts of content related to HTML emails and/or other materials need to be managed by ClinGen

cg-kb-init

Code for initializing Neo4j database backing cg-knowledgebase

cgwi-php

ClinGen Workflow Infrastructure base PHP images

cgwi-php-helm

Helm chart for ClinGen Workflow Infrastructure php apps

clingen-data-model.github.io

Website for data model documentation

clingen-gene-tracker

Web based gene curation workflow tracking application

clingen-hail-reports

Performs filtering against gnomAD and ClinVar datasets. Uses Hail to report records with a population FAF above certain thresholds by gene.

clingen-interpretation

Allele (variant) interpretation model and API for ClinGen

clingen-schemas

Repositories holding schemas for data model entities within ClinGen

clingen-static-resources

clingen-terms

OWL Ontology enumerating ClinGen application specific terms

clingen_ucsc_gene-disease_hub

Track Hub to incorporate ClinGen Gene-Disease Pathogenicity into the UCSC Genome Browser

clinvar-api

Software for working with the ClinVar web API

clinvar-curation-input-tool

Chrome extension to allow curators to capture SCV data to a google sheet directly from clinvar website.

clinvar-curation-reporting

@todo @Danielle

clinvar-ep-reports

Python script to generate ClinGen Expert Panel Excel reports from ClinVar FTP files.

clinvar-ftp-watcher

Cloud Function for detecting new files on the clinvar ftp site

clinvar-gk-pilot

clinvar-gk-python

Project for reading and normalizing ClinVar variants into GA4GH GKS forms

clinvar-gks

dataform project with pipelines to transform clinvar to gks standards

clinvar-ingest

clinvar-ingest-bq-tools

ClinVar ingest BiqQuery tools

clinvar-ingest-reports

ClinGen generates several google sheet based reports from the ClinVar ingested data that originates from the Broad BigQuery data.

clinvar-qc

clinvar-raw-producer

Pilot streaming service to share clinvar SCV data with VCI