clarkevansteenderen Goto Github PK

acp_sdm

beast_plotting

A short R script to plot the result of a dated BEAST phylogeny. Also, plotting character states alongside the phylogeny from the treeio package.

binmat

An R Shiny application for processing binary data from fragment analysis methods such as ISSR and AFLP.

binmat_r

The BinMat R application available as a package on CRAN.

cbc_databases

R Shiny App skeleton for a database for the CBC

cbc_tutorials

A collection of phylogenetics tutorials delivered to colleagues at the Centre for Biological Control (CBC). Topics include producing Bayesian and Maximum Likelihood trees, haplotype networks, reading phylogenies into R, analysing ISSR and SSR data, and using STRUCTURE and SplitsTree.

clarke-van-steenderen-cv

My CV to date, available to download as a PDF.

clarkevansteenderen

clarkevansteenderen.github.io

My personal website, with the template forked from mmistakes/minimal-mistakes

codechallenge

All my thinking about some code challenge and Free Code Camps

dactyid

An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.

dze_r_tutorials

R tutorials for the Department of Zoology and Entomology, Rhodes University

inat_images

Script to download images from inaturalist.org

m.sc.-cochineal-barcoding

Masters thesis

map_shapefiles

R code and shapefiles to plot a map of South Africa's biomes, and plot GPS coordinates onto it.

phd_files

PhD supplementary R code - Tetramesa genetic data

spede_sampler

A Python GUI that (1) randomly resamples Fasta files and (2) creates ML phylogenies for each using FastTree and/or RAxML. These output trees need to then be run in the R Shiny App to run GMYC analyses.

spede_sampler_r

An R Shiny App that assesses sampling effects (e.g. sample size and BEAST parameters) on GMYC output for species delimitation.

tetramesaid

An application to identify a Tetramesa wasp COI or 28S sequence

thermalsampler

ThermalSampleR R package

thermalsampler_shiny

ThermalSampleR Shiny application

vizgradcam

vizgradcam is the fastest way to visualize GradCAM with your Keras models.