ckadipas Goto Github PK

3d-cell-nuclei-denoising-and-segmentation

A novel generic dictionary-based denoising method for improving noisy and densely packed nuclei segmentation in 3D time-lapse fluorescence microscopy images

acenet-for-neuroanatomy-segmentation

ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation

anystar

[WACV 2024] Reference implementation of "AnyStar: Domain randomized universal star-convex 3D instance segmentation"

awesome-tda

A curated list of topological data analysis (TDA) resources and links.

betti-matching

brain-id

Learning Contrast-agnostic Anatomical Representations for Brain Imaging

consistency-ranking-loss

The code for ICLR2023: Confidence Estimation Using Unlabeled Data

dijkstra-s-shortest-path-algorithm

Using binary heaps, binomial heaps, and fibonacci heaps

dmt_loss

DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory

euclidean-distance-transform-3d

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

hsynex

A tool for hypothalamus subregion segmentation capable of working across different MRI modalities and resolution

jump

limbic_thalamus

med-dev-refs

A collection of Regulatory, Guidance and Standards documents relevant for the development of Software-Only Medical Devices

medsam

Segment Anything in Medical Images

path2mr

This a 3D histology reconstruction pipeline that can be implemented with sparse histological sampling and in absence of an MRI reference. This repository described steps of the pipeline and provides access to code for its implementation.

pepsi

[MICCAI 2024] PEPSI: Pathology-Enhanced Pulse-Sequence-Invariant Representations for Brain MRI

quantav

Novel Radiomic Measurements of Tumor-Associated Vasculature Morphology on Clinical Imaging as a Biomarker of Treatment Response in Multiple Cancers

rdm

Our regulatory documentation manager. Streamlines 62304, 14971, and 510(k) documentation for software projects.

spatialcorrection

Learning to Segment from Noisy Annotations: A Spatial Correction Approach

struct-uncertainty

This repository contains the implementation for our work "Topology-Aware Uncertainty for Image Segmentation", accepted to NeurIPS 2023.

structural_uncertainty

Codes for 'Learning Probabilistic Structural Representation for Biomedical Image Segmentation'

synthseg

Contrast-agnostic segmentation of MRI scans

thomas_new

Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPRAGE also (Version 2.1) © Copyright Manojkumar Saranathan 2021 2022

topofit

Rapid, topologically-correct cortical surface reconstruction

topoloss

Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation