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96well_plate_figure

generates a figure of a 96well plate

artic-website

bed2idt

Convert bedfiles to IDT custom spreadsheets

chrisgkent

Config files for my GitHub profile.

enzyme_kinetics_01

Reads experiment data from multiple .cvs. Then applies linear models to generate the rate of reaction

flye-on-cluster

Nextflow wrapper for running Flye Assembles on K8 cluster

hadv

Personal Adenovirus primer schemes

hbv

Schemes HBV

hbv-fieldbioinfomatics

The ARTIC field bioinformatics pipeline for HBV analysis

marv-2023

minidot

Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2

multi_fasta_mask

A pipeline for the generation of Masked genomes from a multi_fasta file

ncov-random-scripts

nmaskgen

Generates pseudo genomes and NMask files from sequence .fasta

nmaskgen_original

Generates a .fasta, were any base position with sequence variability is masked via an N

nmaskgen_snakemake

For the Generation of N masked genomes from clustered sequences

oie_distribution

Development of graphics that visualise FMDV distribution

phage_display

primal-page

primal-panel-analysis

primaschema

Toolkit for tiling PCR primer scheme definitions

primer_rebalance_sm

This rebalances multiplex primer schemes as described in "Improving the evenness of SARS-CoV-2 genome coverage by titration of primer concentration"

sars-cov-2

Testing version of SARs-CoV-2 Primer schemes

schemes_manifest

Testing for new scheme manifest json format

test_data