chisangad Goto Github PK

bioinfo_figs

One of the many questions biologists ask Bioinformaticians is "How can I best represent these results for my publication in the form of a figure?". This workshop seeks to address this question by focusing on the figures that can be developed to address a biological question and provide explanations of how to interpret such figures. This is aimed at improving understanding of these figures generated in a bioinformatics analysis and help biologists present their discoveries/observations in the best way. This workshop will be very helpful for biologists to prepare bioinf figures for their publications and also for looking into their data in a better way. This will help improve the communications between them and us as well.

brisbane2016

Workshop and talk for Brisbane, 2016 Bioc Asia meeting

bulkrnaseqtut

Protocol for running an RNA-seq analysis

chisangad.github.io

About me

datasciencecoursera

datasharing

The Leek group guide to data sharing

horizontalnav

A jQuery plugin that spans a horizontal navigation to fit the full width of it's container.

igraph

Library for the analysis of networks

myquakytools

orthologconverter

Simple function to map gene orthologs between species using EntrezIDs and Taxonomy IDs

pathlinker

Connect the dots in networks.

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scpipe

a pipeline for single cell RNA-seq data analysis

scrnaseqtut

Tutorial for performing scRNA-seq analysis using cellCounts and Seurat

subread

The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.

testing