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ENCODE ATAC-seq pipeline
ATAC-seq peak-calling, QC and differential analysis pipeline
ChIP-seq peak-calling, QC and differential analysis pipeline.
ChIPSeqFPro (beta) is a script for full processing of ChIPSeq data starting from fastq files. It performs fastqc quality control, mapping to the human genome hg19 or mouse mm10 using bwa, sam to bam conversion, peak calling with MACS, creates bigwig files from bam files using bam2bigwig.
This Scirpt is used to transform the Read Count to FPKM by using DESeq2
Predict Diabetes using Machine Learning.
DCC/DAC methylation pipeline source
An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
Java tools for analyzing Drop-seq data
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
eccDNA identification from nanopore long reads of rolling-circle amplicon
Official code repository for GATK versions 4 and up
Clear cell Renal cell carcinoma is a type of kidney cancer which comprises the majority of all renal cell carcinomas. Many efforts have been made to identify biomarkers which could help healthcare professionals better treat this kind of cancer. With extensive public data available, we conducted a machine learning study to determine a gene signature
A pipeline to process m6A-seq data and down stream analysis.
m(6)A methylation analysis
MACS3 R/BioC wrapper
Integrative analysis pipeline for pooled CRISPR functional genetic screens
Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
R package for DNA methylation analysis
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Genome wide orthology inference and dNdS estimation
a preprocessing tool for single molecular data analysis
Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Snakemake workflow for slamDunk toolkit
scripts for RNA-Seq analysis
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.