Error while using spectrum with elementList only when all the ions are not present in the masterlist about chiantipy HOT 7 CLOSED

I am working on this at the very moment. Hope to have a fix soon.

from chiantipy.

I will try t get a release on github soon and conda should be able to pick it up from there.
Ken

from chiantipy.

OK, I will change the behavior here as well
Ken

from chiantipy.

It would be very helpful if you could suggest a quick workaround for now.

from chiantipy.

I have a revised version of _Spectrails/ionGate

I have tested it but am not quite ready for a new release. I see that you get your code from conda. Perhaps I could make a release candidate and conda would probably pick it up if your are interested in testing it.

also, the specification of a user-suppled abundance file should work now
Ken

from chiantipy.

Hi,
Thanks for the quick update. I can test out the new code if its availabe. Would it work by doing a simple conda update?

Asif

from chiantipy.

Thanks!! I will pick it up once it updates.

Another related bug(?) seems to be that if provided element list has capital letters,( i.e elements=['H','He']), running any of the spectrum classes with elementList=elements, converts the original list to small letters. That is elements become elements=['h','he'].

While the code runs as expected, this seems like a bit of unexpected behavior to me. Users typically do not expect methods to change the arguments. I couldn't figure out why this was happening, but my guess would be that .lower() in line 168 and 169 _specTrail is affecttig the original list too.

Asif

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