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10x_spinalcord

Scripts for the 10x SpinalCord project

ann-utils

utils for annotation

ara_wgbs

This repository contains the scripts used for our manuscript "Multi-generational heat and warming induced epimutations contribute to phenotypic adaptation in Arabidopsis".

atac-scripts

Scripts for ATAC-seq from references

barcode_analysis

Scripts and co. for analysing sequence effects in UMI-s and barcodes

basemodstools

Tools for optimizing and QCing performance of BaseMods and related tools on PacBio Data

bsmap

bsmap_kit

A pipeline kit for BSMAP

coursera

Script for downloading Coursera.org videos and naming them.

echarts4r

🐳 ECharts 4 for R

edx-dl

Simple tool to download videos from edX-based sites

edx-downloader

A simple tool to download video lectures from edx.org.

edx-lec-dl

Downloading video-lecture of signed up courses on edx

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

goagent

https://code.google.com/p/goagent/issues/list

human_single_cell

Single cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human specific features

m_model_collection

A collection of M models downloaded from published studies

mauro_scripts

R scripts for CEL-seq data analysis

multimotifmaker

A multi-thread tool for identifying DNA methylation motifs from Pacbio reads

peigs-supplementary-file

Supplementary File of Peigs

pmls-matlab-guide

MLguide1-0.pdf: Nelson & Dodson's "Student's Guide to Physical Modeling with MATLAB." Other items include Errata, code samples, and discussion.

scripts

shadowsocks

A fast tunnel proxy that helps you bypass firewalls

singlecellseq

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

viewbs

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

wj_trisomy18

Scripts for data analysis and visulization in Jing Wang's paper about Trisomy 18