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adgenetics

Genetic architecture of Alzheimer's disease

adiposity_proteins_colorectal_cancer

annoprobe

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

book

brain_pqtl

This repo contains the code, but not the data, to reproduce the analysis of the paper "Genetic control of body weight by the human brain proteome", by Gagnon E et al.

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

dysbiose_project

this repository contains the code (not the data and the results) to reproduce the paper : Impact of the gut microbiota and associated metabolites on cardiometabolic traits, chronic diseases and human longevity: A Mendelian randomization study

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

ema

Explanatory Model Analysis. Explore, Explain and Examine Predictive Models

faers-database

OpenSource FAERS Database Cleansing, Merging and Analysis using postgresql

fi_bmi

This repository contains the code, but not the data, to reproduce the analyses in "A bidirectional Mendelian randomization study disentangling the causal relations between body fat distribution, fasting insulin levels and insulin secretion"

gagnonmr

geo

gse76275-tnbc

gsva

Gene set variation analysis

gsva-1

hyper

An R Package for Geneset Enrichment Workflows

immune_qtl_project

machine-learning

mddsymptoms

Code to reproduce analyses in the MDD symptoms paper

metabolome-wide-mr-for-ms

mr-pipeline

Mendelian Randomization Pipeline for INTERVAL Olink Proteome and Stroke.

mr_based_on_tsmr

mr_tricks

multi-ancestry-pwmr

Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper

my_wgcna

mydata1

myscrna-seq