cfsan-biostatistics Goto Github PK
Name: CFSAN (Center for Food Safety and Applied Nutrition)
Type: Organization
Blog: https://www.fda.gov/about-fda/fda-organization/center-food-safety-and-applied-nutrition-cfsan
Name: CFSAN (Center for Food Safety and Applied Nutrition)
Type: Organization
Blog: https://www.fda.gov/about-fda/fda-organization/center-food-safety-and-applied-nutrition-cfsan
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curation issues.
amrfinder-galaxy
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
SC2 variant detection and composition pipeline
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
A Nextflow pipeline for fast and accurate SNP distance estimation from WGS read data or genome assemblies
Library for managing Galaxy plugins - tools, index data, and workflows.
Tools for working with fasta files.
Depth-weighted De-Mixing
Galaxy workflows that are published by CFSAN
An abstraction layer to run jobs on HPC clusters using Grid Engine, Torque, or locally.
Identification of WGS reads by kmer database
Tools for haploid variant calling with Deep Neural Networks.
LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms
MISO: An open-source LIMS for NGS sequencing centres
This is a template for any new hash-based MLST database
This is a Shiny app for interlaboratory microbiological method validation studies.
Repository for samizdat about NCBI's undocumented Pathogen API.
Cookiecutter template for a Python package.
One Health-compatible metadata package for genomic surveillance of enteric microbes
A tool for managing your pores
A helper tool for running array jobs on an HPC computational node.
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Tools to help choose a reference from a list of assemblies.
RIPS-Rapid Intuitive Pathogen Surveillance
SeqSero2
A toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping.
CFSAN Shigella Typing Pipeline
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.