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Francesco Piscani

Field Applications Scientist at Olympus
Work with CCD, CMOS cameras and sensors for Life Science & Semiconductor applications. Volunteer at Open Source site.

📍 Newport County, RI
🌐 Website

Latest Repositories

mAb-Stability-Predictor Public

This repository contains a computational pipeline to predict the stability of monoclonal antibodies (mAbs) using PyTorch and PyRosetta. Uses PDB information, calculates features relevant to stability prediction.

Languages: Python

mAbsAntibodyDiscovery Public

mAb-QualityPredictor: A PyTorch-based Machine Learning Model for Predicting Monoclonal Antibody Quality.

Languages: Python

pyrosetta_intro Public

Welcome to my PyRosetta repository! PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite, allowing users to leverage Rosetta’s capabilities for protein structure prediction and design.

Languages: Jupyter Notebook

molecular_biology_meanderings Public

This is a Jupyter notebook I have put together some of these equations together with some visualizations and code snippets in Python. These visualizations provide different ways to interpret the data.

Languages: Jupyter Notebook

e_coli-protein-analysis Public

This code demonstrates how to use PyTorch to process the E. coli dataset and train a simple neural network for classification. If you want to use this data with AlphaFold 3 or a similar protein structure prediction tool, this repository can serve as a starting point.

Languages: Jupyter Notebook

ProteinQualityAnalysis Public

Protein quality analysis plays a crucial role in ensuring efficacy and safety in the production of monoclonal antibodies, hormones, and enzymes. Protein quality analysis is essential to ensure that the final product meets all regulatory and safety standards.

Languages: Python

protein-data-collector Public

This setup fetches protein data from UniProt and PDB and logs the combined data to the console and saves it in a text file for further AI training and validation. Adjust the query and data handling as needed to suit your project requirements.

Languages:

🌐 Connect with Me

Feel free to explore my repositories and get in touch if you'd like to collaborate or discuss ideas!

Thank you for visiting!

Francesco Piscani's Projects

bioinformatics icon bioinformatics

A hands-on introduction to the computer-based analysis of genomic and biomolecular data through the use of widely available modern open source techniques.

businescard icon businescard

I try to make apps that solve a particular issue that I may encounter in my daily life. In this case, a business card application that replaces the use of paper business cards and allows you to send messages bypassing LinkedIn, or if you prefer to use LinkedIn, it has a QR code functionality that redirects you to a LinkedIn profile or other URL.

computational-genomics icon computational-genomics

Computational and statistical analysis to decipher biology from genome sequences and related data, including both DNA and RNA sequence as well as other "post-genomic" data (i.e., experimental data obtained with technologies that require the genome sequence, such as genomic DNA microarrays).

e_coli-protein-analysis icon e_coli-protein-analysis

This code demonstrates how to use PyTorch to process the E. coli dataset and train a simple neural network for classification. If you want to use this data with AlphaFold 3 or a similar protein structure prediction model, you would need: The actual amino acid sequences of the proteins, not just the features provided in this dataset.

fetch_pdb_data icon fetch_pdb_data

ProteinVisualizer is a React Native application built with Expo that allows users to fetch and visualize protein structure data from the PDB database. The application provides detailed information about the protein, including its ID, and molecular weight. Users can also download the PDB data locally or upload it to GoogleDrive.

fltk icon fltk

Working with the fltk library

gippityquiz icon gippityquiz

This is a quiz where the questions and correct answers on various subjects are provided by a LLM. The user can change the prompt depending on the subject matter.

kupkake icon kupkake

Cross Platform blog with Expo Router

ldp icon ldp

The main LDP repository, converted from CVS

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