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azimuth

A Shiny web app for mapping datasets using Seurat v4

bioinformatics-pipeline-tutorial

A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.

bluise

datasets

🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools

dsnickfury3plusorchid

dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go with it for iterative CRISPR analysis over an exome.

elevation

End-to-end guide design for CRISPR/Cas9 with machine learning

general

mcvr

Implementation of molecular cross validation technique to determine ideal number of PCs for scRNA-seq in R

moff

Predict off-target effects for CRISPR/Cas9

nextflow

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

velocyto.r

RNA velocity estimation in R