Issue with downloading datasets 2 and 3 about datasets-sars-cov-2 HOT 2 CLOSED

Yes I believe that the _2 files are only going to be from the nanopore reads and so you can safely ignore those.

Thank you for bringing it to our attention about the assemblies. It looks like some are only available on ENA and it slipped past us. Some help from NCBI says

ENA is releasing this data both as part of the analysis package (ERZ) and as a traditional GenBank record. The accession for ERZ1690836 is LR963198. If you wish to fetch their sequence accession from an ERZ number in the future, use their xrefs API, e.g.: https://www.ebi.ac.uk/ena/xref/rest/json/search?source=assembly&source_accession=ERZ1690836

Thank you NCBI for this help. I am going to keep this ticket open until we either bring in the appropriate genbank records or when we add the API to the GenFS Gopher script.

from datasets-sars-cov-2.

Fixed in v0.5.3 and with #10

from datasets-sars-cov-2.