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1071python

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

bioimage-analysis-workshop-23-24

All materials for bioimage analysis workshop at Kyoto and Taipei, Dec 2023 and Jan 2024

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

clinker

Gene cluster comparison figure generator

cmplot

📊 Circular and Rectangular Manhattan Plot

complexheatmap

Make Complex Heatmaps

farmcpupp

Perform GWAS using the FarmCPU model.

free-programming-books-zh_cn

:books: 免费的计算机编程类中文书籍，欢迎投稿

huangetal2012_reanalysis

R commands for determining the significant sweep windows

imetaplot

iMeta teaches you to plot

ldblockshow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

linux-cheatsheet

Comprehensive Linux Cheatsheet

ngsphy

NGSphy: phylogenomic simulation of next-generation sequencing data

popgen_tutorial

poplddecay

PopLDdecay: A new simple and efficient software for Linkage Disequilibrium Decay analysis based Variant Call Format

presentations

Presentations from the course

python-cheatsheet

Comprehensive Python Cheatsheet

python_basic

python_basic

q-aggr

scripts

Scripts for analysis used during the course

sydneyphyloworkshop

Sydney Phylogenetics Workshop

tcsbu

a TCS network beautifier

test

to-gcn

Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data

tomorrow-theme

Tomorrow Theme the precursor to Base16 Theme

training-collection

Collection of bioinformatics training materials

training-data-analyst

Labs and demos for courses for GCP Training (http://cloud.google.com/training).

tutorials

Tutorials on phylogenetic and phylogenomic inference

variantvisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual: