cbreenmachine Goto Github PK

240312-seq-stats

Compute summary statistics for aligned sequencing files.

850k-bmi

Scripts used to analyze EPIC 850k arrays for associations with BMI

axonregen

badger

cbreenmachine.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

data-science-problems

Foundational data science techniques--scraping, cleaning, exploratory analysis--on wide range of topics.

deep-learning-sandbox

Notebooks to demonstrate basic deep learning concepts.

eda-meqtl

Quick exploratory analysis of meQTL in LOAD project

emergency-dept-simulation

Analysis/data from ED simulation project.

experimentaldesign-bestmargarita

genplot

Miscellaneous genomics plots

goplot

gwas-project

Code for final project for BMI 826.

hpc-notes

Notes from Dan Negrut's High-Performance Computing Class (ME 759)

load-850k-analysis

load-dmps-browser

machine-learning-problems

Basic machine learning algorithms implemented. Assignments and projects from STOR 565--UNC's Machine Learning course. Code

me-hc-bayes

mead-850k

mead-fq2bed

Pipeline used to take raw fastq files, trim, map, and process to methylated / coverage bed files

mead-models

mead-models-targets

Targeted version of meAD-models pipeline

mead-paper

Analysis of methylation data from Late-onset AD cohort

mead-ucsc-tracks

methy-load

methy-seq-gembs-processing

Rewrite of methylation processing pipeline using snakemake

ring-labeler

Neural network architecture to classify pixels in image as signal/noise.

rnaseqelegans

rray

Idioms and workflows used frequently in EPIC 850K array analysis

safe-haven

Some notebooks to convince myself of concepts from Spitznagel's "Safe Haven"