cbmckni Goto Github PK

builderdash

Builderdash is a cross cloud build system for cloud images

dcblast

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

driverrewardsmobile

Driver Rewards App

fdt-docker

Dockerfile for Fast Data Transfer Tool: https://fast-data-transfer.github.io/

gemmaker

A NextFlow workflow for converting a set of SRA files to a set of Gene Expression Vectors (GEV)

gene-oracle-docker

Gene Oracle dockerized, for running across Kubernertes.

gpn-workshop

hicn-genomics

Compiled, organized, and documented scripts/tools for pulling and publishing data via hICN. Included is a biodata case study focused around 3000+ indexed genomes.

kinc-k8s-demo

A demo/workshop for using a series of applications to create a Kubernetes cluster and run a genomics workflow.

kinc-nf

Nextflow pipeline for KINC

kinc-nf-demo

KINC-NF demo for Kubernetes

mini-dfa

Mini-DFA that produces data flow analysis for MIPS instructions.

ndn-dpdk-k8s

ndn-k8s

A simple Kubernetes deployment of a Name-Defined Networking(NDN) container.

ndn-tools-docker

Dockerized tools for Named Data Networking: https://github.com/susmit85/ndn-tools

nextflow-api

nextflow-kinc

***WORK IN PROGRESS*** Will be a KINC as a Nextflow workflow.

nextflow-stress-test

Dummy pipeline to shorten debug time for more complex pipelines.

ood-code-server

palmetto-log-notebook

Notebook for analyzing Palmetto GPU logs.

power8-gem

An adaptation of the PBS-GEM for use with IBM's POWER8 architecture.

pvc-data-loader

s3

Minimal Amazon S3 Client Docker Container

simplecpu

A simple CPU simulator.

slate-catalog

SLATE application catalog based on Helm

slurmflow

A collection of Docker containers for setting up a Slurm-based cluster, configured to run Nextflow workflows.

sriov-network-device-plugin

SRIOV network device plugin for Kubernetes

threaded-merge-sort-c

A threaded merge sort program coded in C.

tigeroptimizer

A script that pulls grade distributions from Clemson's Tiger Grader for easy schedule optimization!