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chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

clovr-base

The clovr-base repository is a collection of several key parts of the CloVR VM including the pipelines, software, test suite, and system files needed for the VM to function successfully.

command_line_bootcamp

:computer: command-line bootcamp adventure in your browser

cutadapt

cutadapt removes adapter sequences from sequencing reads

cutlass

An iHMP domain specific API using osdf-python

cv

CV, typesetted in Helvetica Neue, using XeTeX, TikZ and Biblatex

cv-friggeri-x

A LaTeX/XeTeX template based on the famous Friggeri CV

dbk-tools

Tools for working with Deutsche Bank file formats

disease-ontology

Tools and source for the Disease Ontology browser web app.

dotfiles

Dotfile stuff to make setup on a new machine easy.

ergatis

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.

friggeri-cv-a4

A4 paper format version of the fancy Friggeri CV LaTex template

osdf-schemas

The OSDF JSON-Schema files for the iHMP project

pandasschema

A validation library for Pandas data frames using user-friendly schemas

pokemongo-map

🌏 Live visualization of all the pokemon in your area... and more!

spacegraphcats

Indexing large assembly graphs -- remember, in space, no one can hear you miao!

swedish-mortality

An interactive website to explore factors that contribute to Swedish Mortality

vappio

Vappio is an API for the creation and manipulation of clusters on a cloud in a platform agnostic way. vappio was originally designed on top of EC2 so in some places it uses EC2 terminology but the functionality is more generic. Vappio works on EC2 and Nimbus based infrastructures.

wwarn

WWARN code

xdm-carze-plugin-repo

Stab at some XDM plugin creation.

xdm-pannal-plugin-repo

Custom XDM plugins by pannal

xdm-plugins

yamp

YAMP: Yet Another Metagenomic Pipeline