caojiabao Goto Github PK

16s_pipeline

af-classification

The repo is for the Heart Disease classification project using Transformer Encoders in PyTorch.

alibaba_tianchi_book

阿里云天池大赛赛题解析

awesome-bioinformatics-tools

A curated list of awesome Bioinformatics software, tools and resources

awesome-nanopore

A curated list of awesome nanopore analysis tools.

bacteriophagehostprediction

Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"

basemod-3.0

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bilstm_attn

biomagician

Useful tools in microbiomics and metagenomics

chinese-text-classification-pytorch

中文文本分类任务，基于PyTorch实现（TextCNN，TextRNN，FastText，TextRCNN，BiLSTM_Attention, DPCNN, Transformer，Bert，ERNIE），开箱即用！

chinese-text-classification-pytorch-1

中文文本分类，TextCNN，TextRNN，FastText，TextRCNN，BiLSTM_Attention，DPCNN，Transformer，基于pytorch，开箱即用。

clustergenomes

Archive for ClusterGenomes scripts

clusterprofiler

:bar_chart: A universal enrichment tool for interpreting omics data

coverm

Read coverage calculator for metagenomics

crispropendb

cwdtw

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

cwsdtwnano

Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the continuous wavelet Subsequence DTW for nanopore raw signal search (cwSDTWnano), to enable the direct subsequence inquiry and exact mapping in the nanopore raw signal datasets. The proposed algorithms are based on the idea of Subsequence-extended Dynamic Time Warping (SDTW) and directly operates on the raw signals, without any loss of information. DSDTWnano could ensure an output of highly accurate query result and cwSDTWnano is the accelerated version of DSDTWnano, with the help of seeding and multi-scale coarsening of signals that based on continuous wavelet transform (CWT).

deep-learning-for-image-processing

deep learning for image processing including classification and object-detection etc.

dram

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

feast

Fast expectation maximization for microbial source tracking

gggenomes

A grammar of graphics for comparative genomics

ggtreeextra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

gravity

kallisto

Near-optimal RNA-Seq quantification

kaptive

kieft_and_zhou_et_al._2020

kmer_models

Predictive kmer models for development use

long-read-catalog

catalog for long-read sequencing tools

machinelearning

My blogs and code for machine learning. http://cnblogs.com/pinard