camachodejay Goto Github PK

2dpolim-analysis

amyloid_aggregation_segregation_scirep10_10127

Image analysis of cell aggregation for: Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish. Sci Rep 10, 10127 (2020). https://doi.org/10.1038/s41598-020-66584-8

binder_playground

Playing around with binder

camachodejay

Config files for my GitHub profile.

camachodejay.github.io

Personal website of Rafael Camacho Dejay

czi_spec_im_load

Loading and handling of spectral imaging data from CZI format using bioformats

diffusion_binding_simulations

Simulations used in the article: Mapping transient protein interactions at the nanoscale in living mammalian cells

fret-calculations

This repository contains the code necessary to simulate the fluorescence emission of an anisotropic ensemble of GFP molecules when excited by polarized light.

glrtparticledetection

minimal example of a Generalized Likelihood Ratio Test (GLRT) for the localization of single emitters in a fluorescence microscopy image

high-throughput-screening

Code related to the article: High-throughput time-resolved morphology screening in bacteria reveals phenotypic responses to antibiotics doi:10.1038/s42003-019-0480-9

indigo

:ramen: Minimalist Jekyll Template

jbook-test

Testing jupyter books

laurdan_macro_fiji

ImageJ macro for GP images analysis Quantitative Imaging of Membrane Lipid Order in Cells and Organisms

mobie-python-examples

moon

Moon is a minimal, one column jekyll theme.

myfavouritebiastool_neubias

Favorite imaging analysis tools of NEUBIAS members - editor Kota Miura

napari-plugin-smart-microscopy-minimal

ome-zarr-examples

Keeping track of ome-zarr generation from different microscopes and formats

polim_minimal

Minimal working example of the single funnel approximation analysis for 2D POLIM data

polymer3d

soon

programmingsessions

This repo contains the material used during the Programming Sessions of KU Leuven. Our main idea is to teach programming and the MATLAB language to young researchers.

sstenberg_3dyeast_tools

ImageJ macro tools for Simon Stenberg to assist him in his yeast segmentation and quatification

teaching-bioimage-analysis-python

A place to collect information used in lectures, demos, workshops, etc.

teaching-imagej-fiji

zeiss-oad-examples

Examples of ZEISS OAD scripts for Guided Acquisition