Git Product home page Git Product logo

Comments (2)

georgersmith99 avatar georgersmith99 commented on August 25, 2024

Hey there! I am trying to run Nanotube analysis on some nanostring data in a CSV format and am running into an issue. I'm pretty new to this so apologies if im being naive but when running this code:

dat <- processNanostringData(nsFiles = "/Users/georgesmith/Documents/INS Year 4/OND2.csv",
                             replicateCol = c('ON_D2_1', 'ON_D2_2', 'ON_D2_3'), 
                             normalization = "nSolver",
                             housekeeping = c("PGK1", "OAZ1", "TBP", "POLR2A", 
                                              "ABCF1", "SDHA", "NRDE2", "PPIA",
                                              "UBB", "STK11IP","G6PD","TBC1D10B"),
                             bgType = "t.test", bgPVal = 0.01,
                             output.format = "ExpressionSet"
                             )

i didn't use sample_data as when i tried to load my CSV file into it i'd get an empty value after. When I run this i get the error:

Loading count data...... Averaging technical replicates..... Calculating positive scale factors......Error in if (sum(dat$dict$CodeClass == "Positive") == 0) { : missing value where TRUE/FALSE needed

Never mind

from nanotube.

georgersmith99 avatar georgersmith99 commented on August 25, 2024

Solved it myself at the time of writing, sorry for that!

Anyone who comes across the same thing, include your CodeClass column!

from nanotube.

Related Issues (9)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.