c5shen Goto Github PK
Name: Chengze Shen
Type: User
Bio: Computer Science Ph.D. student @ UIUC
Name: Chengze Shen
Type: User
Bio: Computer Science Ph.D. student @ UIUC
A standalone alignment merging tool that utilizes transitivity that merges a set of overlapping alignments. The original implementation comes from PASTA and UPP (see README).
New Code for EPA-ng-BSCAMPP
Pipeline that uses an improved version of CM for generating well-connected clusters
Copy of colabfold. Adding options to realign the retrieved sequences from MMSeqs2
This is a reverse engineered library for Skyrim Special Edition and Skyrim VR.
better community detection through small cuts
A copy of constrained-INC (INC) from steven-le-thien
Graph Clustering Merger
A repo where I will post questions that summarize prior week's contents to help students prepare for the next week's quiz.
Git repo for the CS598 final project. This is a simple modification to the ILP version of PhISCS, where we allow the model to handle ISA (infinite site assumption) violations implicitly.
an ensemble usage of MAFFT-linsi --add on large datasets
A class project for CS508 from UIUC to implement the classic BLAST algorithm using different GPU computing techniques.
k-means clustering sorting to heatmap display
Learning and Aligning Large Protein Families (MSA-HMM)
LLM training in simple, raw C/CUDA
A legacy version of MAGUS that I will personally work on
A collection of deep learning implementations, including MLP, CNN, RNN. Additionally, a new CNN approach for solving PDEs are provided (GACNN).
A tool for divide-and-conquer tree estimation via a shared distance matrix
Codes for computing novelty indicators.
Phylogenetic orthology inference for comparative genomics
Ensemble of HMM methods (SEPP, TIPP, UPP)
A minimal Souls-like HUD for Skyrim AE & SE. SKSE plugin.
A 03-713 Bioinformatics Practicum project. It focuses on virus transcriptome detection of a given diseased model (i.e. human cancer) using RNA-seq data, and in the future, some further analyses including SNP analysis etc.
WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.