Kristen James's Projects
RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
In this Repository you can Convert the Illumina Final Report to Plink format and easy to run and going to start the analysis(Stratification, population genetics, GWAS or GS)
Cluster-based QTL analysis pipeline built around r/qtl2
Source for derekogle.com
A multitude of things involving FL100 food data (ASA24, FFQ)
USDA Nutrition codes Tree
A robot powered training repository :robot:
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
testing my setup
Decrease run time for permutation analysis by filtering phenotypes at a conservative threshold determined by quantile standard error. Contains methods for self-optimizing runs, self-completing runs, self-generating SLURM batch scripts, QTL results generation and full permutations.
USDA Carpentries Workshop March 2021
3’ Tag RNA-seq pipeline
Rendering of the workshop-template site