Comments (1)
Here are the sites that lifted over, but were dropped for QC reasons besides PASS (or 99% of them).
The sites that didn't lift over I should make a repo for.
gnomad_skipped.zip
Leaving this open to discuss whether we should stick the sites with discordant reference bases in the main gnomad databases, or make separate tracks that include those.
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Related Issues (20)
- Sprint 7 - Rare variant Task List
- Write annotation conf file to output dir HOT 1
- Consistent bystro config naming scheme HOT 4
- Filter dosage matrix during saving HOT 1
- Fix sporadic indexing issues HOT 1
- Make saving much faster HOT 1
- Create local Ancestry cli tool
- Determine standard in/outbound ports that we need on servers
- Send assembly version with ancestry job requests
- Sprint 9 Task List HOT 3
- [ancestry] Use assembly when choosing which model to use
- [annotation] Stitch Together VCF Files - Second Step
- [prs] Benchmark Langevin Dynamics PRS-CS against PRS-CS and SBayes-RC
- [rare variant] Add support for STAAR
- [annotation] Add LOFTEE and REVEL
- PyPI Bystro package
- Sprint 11 Task List HOT 8
- POE Deal with systematic bias in singular values under null model
- Rare Variant Analysis Paper Compendium
- Sprint 12 Task List HOT 2
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