16s-qiime-protocol

Pipeline del análisis comenzado el día 4 de mayo de 2021, tema: "bloqueadores"

all_yml_files

Compilation of all the YAML files used in the unit (both for backup and sharing purposes)

ansiblerecipes

Each folder contains ansible playbook and all requiered scripts to deploy some of our machines.

assemblybacterias

bacterial_assembly-nf

Haploid bacterial assembly and automatic annotation implemented using Nextflow

bacterial_qc

bu-hack-a-isciii

bu-isciii

Our Wiki and main public documentation repository.

builder

a template ready to go to easily build, test, and deploy reproducible SCIF containers!

buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

buisciii.github.io

BU-ISCIII team website

centos7_base_image

Static CentOS7 image with updated development tools. It speeds up the creation of containers based on CentOS7.

chewbbaca

BSR-Based Allele Calling Algorithm

chipseq-nf

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

cna_bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria

concat_lanes

Concatenation scripts fastq files outputted by bcl2fastq Illumina software. It is adapted to ISCIII-cluster using SGE for parallel sample processing.

django_utils

Custom and useful features for django

download_bigsdb_api

Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

eutils_search_cd44_paper

This repository contains a custom python script that finds citations that include the name of a gene along with a condition provided by the user. P.e brca2+AND+(MIGRATION)

exome_pipeline

Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.

fastq2ubam

Scripts for converting FASTQ files into unaligned BAM files, and viceversa, conserving all information in the @SEQ_ID field.

galaxy_production

Documentation and cofiguration of our galaxy production server

galaxy_virologist_training

Galaxy training for virology profiles

genebygenebact

Gene-by-gene outbreaks analysis pipeline using cgMLST schemas

introduction_to_bioinformatics

In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

iskylims_clinic

iskylims_core

iSkyLIMS home website for information and links purposes

iskylims_drylab

iskylims_wetlab

This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.