2023-spring---cell-biomechanics--bme-403-m01u15uc1----262023---243-pm

asset-host

Repo for storing assets

babylonjs-viewer

Import from glitch.

bscott711

Config files for my GitHub profile.

chimerax-measure-intensity

ChimeraX Bundle that adds measure distance and measure intensity for coloring isosurfaces based on local distance between frames or local intensity

chimeraxcroppy

create-react-app-babylonjs

BabylonJS + Create React App (JavaScript) Starter Kit

eln

Electronic Laboratory Notebook

llspy

Lattice light-sheet post-processing utility.

llspy-slm

SLM binary mask generator for Lattice Light Sheet microscopy

napari-training

next-babylon-netlify

Deploy production build of nextjs-reactbabylonjs app to netlify. The result is a static page that is rendered quickly and the interactive isosurfaces are smooth.

next-netlify

Create a netlify app that uses glitch/fastly for asset management

next-netlify-starter

Used to generate demo-site on netlify

opencell-portal-pub

Public read-only repo for the 2022 OpenCell web app

pycudadecon

Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

static-babylon

3D Isosurface viewer. Requires loading assets onto glitch, and a static export from netlify.

surface-data

surface_coverage

A python package to calculate the number of molecules per unit area

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

vollseg

Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.

webgl-volume-animation

Play back 3D volumetric time series data

webgl-volume-raycaster

A WebGL Volume Raycaster