brouwern Goto Github PK

1010syallbus

Syllabus for Biological Sciences 1010: Communication in the Biological Sciences

abdcompanion

An R-based companion to Whitlock & Schluter's Analysis of Biological Data

abdguide

Reading guide to Whitlock & Schluter's Analysis of Biological Data

animalresp

Function for cleaning animal respiration data

avesdemazan

Analysis of bird community monitoring data from the Mazan Reserve, Ecuador

biodata

Example datasets from the life sciences for statistics, data visualization, and data science.

biosc_0160

Website for N Brouwer's Foundations of Biology 2 (BIOSC 0160) at the University of Pittsburgh

biosc_1120

Course website for BIOSCI 1120: Biostatistics at the University of Pittsburgh Department of Biological Sciences

biosci0160_2024

Data and code related to Foundations of Biology 2 independent genomics investigation

biosci_0160_syllabus

Syllabus for Foundations of Biology 2 at the University of Pittsburgh.

biosci_0835

Syllabus for BioSic 0835 "Our Changing World" at the University of Pittsburgh

biosci_1540

Syllabus and resources for BioSci 1540 Computational Biology at the University of Pittsburgh

biosci_1540_lectures

Lecture slide decks for BIOSCI 1540 at the university of Pittsburgh.

biosolve_avian_malaria

Molecular biology lab protocols for detecting avian malaria, determining avian sex

blaststats

Replication of Altschul and Gish 1996 "Local Alignment Statistics"

book_r_ecological_data_science

R for ecologists

brouwer_ggplot_guide

Notes on plotting in R, with a special focus on ggplot.

brouwer_portfolio_data

Datasets used in my portfolio at https://bit.ly/brouwer_portfolio

carnivorephylo

Replication of carnivore phylogeny examples from Baum and Smith (2013) Tree Thinking chapters 7, 8, 9

casestudiesecostats

Case studies and worked examples of eco- and biological statistics.

climate_data_compilation

Compile multiple forms of climate and environmental data into a single dataframe and prepare for use in analyses (ie time lags)

cnvs

Experimental R package to access Canvas LMS API based on gh

codecapsules

Condensed guides to key R functions

companion_to_analysis_of_bio_data

Teaching materials related to Whitlock & Shulter's "Analysis of Biological Data" 2nd ed.

compbio2021

Assignments for Computational Biology Fall 2021 at the University of Pittsburgh

compbio2023

compbio4all

A repository of data and lessons introducing key concepts related to computational biology.

compbio4all_book

Computational Biology for Book

compbio4all_theblog

A blog on computational biology and bioinformatics

countpva

Implementation and explication of count-based population viability analysis (PVA) of Dennis et al. (1991), Morris & Doak (2002), and subsequent extensions.