Comments (2)
Hi @zhilizheng - Please post the output or error logs. We will review.
from cromwell.
Hi @dspeck1 ,
Thanks for your reply. The is the cromwell outputs when things happened:
=======================log start============
status_events {
description: "Job state is set from QUEUED to SCHEDULED for job projects/A_JOB_ID."
event_time {
seconds: 1713287682
nanos: 566509009
}
type: "STATUS_CHANGED"
}
status_events {
description: "Job state is set from SCHEDULED to RUNNING for job projects/A_JOB_ID."
event_time {
seconds: 1713287919
nanos: 96623968
}
type: "STATUS_CHANGED"
}
status_events {
description: "Job state is set from RUNNING to FAILED for job projects/A_JOB_ID. Job failed due to task failures
. For example, task with index 0 failed, failed task event description is Task state is updated from RUNNING to FAILED on zones/A_INSTANCE_ID due to Spot VM
preemption with exit code 50001."
event_time {
seconds: 1713288624
nanos: 767597866
}
type: "STATUS_CHANGED"
}
task_groups {
key: "group0"
value {
counts {
key: "FAILED"
value: 1
}
instances {
machine_type: "e2-standard-2"
provisioning_model: SPOT
task_pack: 1
boot_disk {
type: "pd-balanced"
size_gb: 30
image: "projects/batch-custom-image/global/images/batch-cos-stable-official-20240320-01-p00"
}
}
}
}
run_duration {
seconds: 705
nanos: 670973898
}
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO - GcpBatchAsyncBackendJobExecutionActor [UUID(0c7363b7)Test.mergeTest:NA:1]: Status change fr
om Running to Failed
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO - isTerminal match terminal run status with Failed
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO - GCP batch job unsuccessful matched isDone
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.engine-dispatcher-2358 INFO - WorkflowManagerActor: Workflow 0c7363b7-6b8f-48cf-8f38-f66d127b305f failed (during ExecutingWorkflowSta
te): java.lang.RuntimeException: Task Test.mergeTest:NA:1 failed for unknown reason: Failed
at cromwell.backend.standard.StandardAsyncExecutionActor.handleExecutionFailure(StandardAsyncExecutionActor.scala:1170)
at cromwell.backend.standard.StandardAsyncExecutionActor.handleExecutionFailure$(StandardAsyncExecutionActor.scala:1169)
at cromwell.backend.google.batch.actors.GcpBatchAsyncBackendJobExecutionActor.handleExecutionFailure(GcpBatchAsyncBackendJobExecutionActor.scala:123)
at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$handleExecutionResult$11.applyOrElse(StandardAsyncExecutionActor.scala:1442)
at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$handleExecutionResult$11.applyOrElse(StandardAsyncExecutionActor.scala:1439)
at scala.concurrent.impl.Promise$Transformation.run(Promise.scala:490)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:41)
at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:49)
at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
2024-04-16 17:30:28 cromwell-system-akka.dispatchers.engine-dispatcher-2309 INFO - WorkflowManagerActor: Workflow actor for 0c7363b7-6b8f-48cf-8f38-f66d127b305f completed with status 'Fa
iled'. The workflow will be removed from the workflow store.
=======================log end============
Thanks. If I run the WDL again, it works without any problem. The jobs fails will always be preempted.
Regards,
Zhili
from cromwell.
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