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dspeck1 avatar dspeck1 commented on July 22, 2024

Hi @zhilizheng - Please post the output or error logs. We will review.

from cromwell.

zhilizheng avatar zhilizheng commented on July 22, 2024

Hi @dspeck1 ,

Thanks for your reply. The is the cromwell outputs when things happened:

=======================log start============

status_events {
  description: "Job state is set from QUEUED to SCHEDULED for job projects/A_JOB_ID."
  event_time {
    seconds: 1713287682
    nanos: 566509009
  }
  type: "STATUS_CHANGED"
}
status_events {
  description: "Job state is set from SCHEDULED to RUNNING for job projects/A_JOB_ID."
  event_time {
    seconds: 1713287919
    nanos: 96623968
  }
  type: "STATUS_CHANGED"
}
status_events {
  description: "Job state is set from RUNNING to FAILED for job projects/A_JOB_ID. Job failed due to task failures
. For example, task with index 0 failed, failed task event description is Task state is updated from RUNNING to FAILED on zones/A_INSTANCE_ID due to Spot VM
 preemption with exit code 50001."
  event_time {
    seconds: 1713288624
    nanos: 767597866
  }
  type: "STATUS_CHANGED"
}

task_groups {
  key: "group0"
  value {
    counts {
      key: "FAILED"
      value: 1
    }
    instances {
      machine_type: "e2-standard-2"
      provisioning_model: SPOT
      task_pack: 1
      boot_disk {
        type: "pd-balanced"
        size_gb: 30
        image: "projects/batch-custom-image/global/images/batch-cos-stable-official-20240320-01-p00"
      }
    }
  }
}
run_duration {
  seconds: 705
  nanos: 670973898
}

2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO  - GcpBatchAsyncBackendJobExecutionActor [UUID(0c7363b7)Test.mergeTest:NA:1]: Status change fr
om Running to Failed
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO  - isTerminal match terminal run status with Failed
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.backend-dispatcher-2485 INFO  - GCP batch job unsuccessful matched isDone
2024-04-16 17:30:25 cromwell-system-akka.dispatchers.engine-dispatcher-2358 INFO  - WorkflowManagerActor: Workflow 0c7363b7-6b8f-48cf-8f38-f66d127b305f failed (during ExecutingWorkflowSta
te): java.lang.RuntimeException: Task Test.mergeTest:NA:1 failed for unknown reason: Failed

        at cromwell.backend.standard.StandardAsyncExecutionActor.handleExecutionFailure(StandardAsyncExecutionActor.scala:1170)
        at cromwell.backend.standard.StandardAsyncExecutionActor.handleExecutionFailure$(StandardAsyncExecutionActor.scala:1169)
        at cromwell.backend.google.batch.actors.GcpBatchAsyncBackendJobExecutionActor.handleExecutionFailure(GcpBatchAsyncBackendJobExecutionActor.scala:123)
        at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$handleExecutionResult$11.applyOrElse(StandardAsyncExecutionActor.scala:1442)
        at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$handleExecutionResult$11.applyOrElse(StandardAsyncExecutionActor.scala:1439)
        at scala.concurrent.impl.Promise$Transformation.run(Promise.scala:490)
        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:41)
        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:49)
        at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
        at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
        at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
        at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

2024-04-16 17:30:28 cromwell-system-akka.dispatchers.engine-dispatcher-2309 INFO  - WorkflowManagerActor: Workflow actor for 0c7363b7-6b8f-48cf-8f38-f66d127b305f completed with status 'Fa
iled'. The workflow will be removed from the workflow store.

=======================log end============

Thanks. If I run the WDL again, it works without any problem. The jobs fails will always be preempted.

Regards,
Zhili

from cromwell.

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