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Ben Evans's Projects

4p icon 4p

Parallel Processing of Polymorphism Panels

admix-utils icon admix-utils

some short scripts to organize and visualize admixture runs

agalma icon agalma

Singularity definitions for agalma

deeplabcut icon deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

dropest icon dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

easybuild-easyblocks icon easybuild-easyblocks

Collection of easyblocks that implement support for building and installing software with EasyBuild.

easybuild-easyconfigs icon easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

easybuild-framework icon easybuild-framework

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

export_converter icon export_converter

A utility to convert Affy Genotyping Console 4 export files for Axiom_aegypti1 into more useful data files

gps_r icon gps_r

attempts to get Elhaik et al 2014 to run on some of my data

hutan icon hutan

Analysis of phylogenetic tree topology

minimal icon minimal

Minimal is a Jekyll theme for GitHub Pages

mps_workshop icon mps_workshop

Some files and presentation material related to the MPS workshop. I ran the learn linux/python/ngs tools day

nanoseq icon nanoseq

Nanopore demultiplexing, QC and alignment pipeline

optcrosses icon optcrosses

finding the best crosses to genotype F1 individuals of to maximize the number of AA|BB x AB parental genotypes screened

pyrad2genepop icon pyrad2genepop

takes a .alleles file and a delimited individual -> population file to make a genepop file w/ haplotypes

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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