Comments (5)
hi @danielecook could you try the latest commit? I explicitly added the numpy
directory to the setup.py includes.
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@brentp thanks for replying so quickly. Still getting this error.
49 warnings generated.
clang -bundle -undefined dynamic_lookup build/temp.macosx-10.10-x86_64-2.7/cyvcf2/cyvcf2.o cyvcf2/helpers.c cyvcf2/helpers.h -L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib -lhts -o build/lib.macosx-10.10-x86_64-2.7/cyvcf2/cyvcf2.so
clang: error: cannot specify -o when generating multiple output files
error: command 'clang' failed with exit status 1
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thanks for testing. I pushed one more commit that may resolve this. If not, I'll have to find a mac laptop to test on.
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That seems to have fixed it! Thanks. Dan
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great! let me know if you have any other problems.
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Related Issues (20)
- Issues with cyvcf2 memory allocation HOT 3
- cyvcf2 wheel build fail on 0.30.19~0.30.22 (python3.11 + arm64 + debain bookworm) HOT 7
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- Bug: Set_samples function somehow removed all FORMAT fields HOT 2
- Floating point imprecision HOT 8
- Dealing with missing values in INFO column HOT 2
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- Any method available to split vcf files into individual sample vcf files
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- Add setter for POS HOT 1
- Crash with single GT allele value - UnicodeDecodeError: 'ascii' codec can't decode byte 0x81 in position 1: ordinal not in range(128) HOT 2
- Could you bump a new version to the pip HOT 1
- Provide access to index stats HOT 6
- Suggest not to remove htslib/config.status at setup.py
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- Adding new variant record
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- Skip the warnings? HOT 2
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