Jirka Borovec's Projects
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
Automatic architecture search and hyperparameter optimization for PyTorch
Automatically build ARIMA, SARIMAX, VAR, FB Prophet and XGBoost Models on Time Series data sets with a Single Line of Code. Now updated with Dask to handle millions of rows.
image registration related books, papers, videos, and toolboxes
Interactive keyboard for EEG, using Brain-Control interface
BIRL: Benchmark on Image Registration methods with Landmark validations
Personal
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
A command line tool for generating text-based representations of file hierarchies
cuDF - GPU DataFrame Library
Dataset: landmarks for registration of histology images
Kaggle Python docker image
Dockerfile containing FFmpeg, OpenCV4 and Python2/3, based on Ubuntu LTS
This Docker image a i basic image with accent on automatic pushing to Docker Hub.
Automate issue discovery for your projects against Lightning nightly and releases.
Folding@home Client Advanced Control GUI
A fast library for AutoML and tuning. Join our Discord: https://discord.gg/Cppx2vSPVP.
Running large language models like OPT-175B/GPT-3 on a single GPU. Up to 100x faster than other offloading systems.
GitHub Action for caching pulled images to avoid needing to pull each time a workflow is run.
Github Action to unlock git-crypt secrets
GitPython is a python library used to interact with Git repositories.
The first real AI developer
Python wrappers for the GridCut C++ library for solving graph cuts in grids
Modern, extensible Python project management
Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023).
Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.
A python library built to empower developers to build applications and systems with self-contained Computer Vision capabilities
A (PyTorch) imbalanced dataset sampler for oversampling low frequent classes and undersampling high frequent ones.
Image augmentation for machine learning experiments.