Comments (7)
sahil1105
commented on August 14, 2024
Hi @willyyang, thanks for trying Bodo and reporting this issue.
I wasn't able to replicate the Docker build issue:
% docker build --file BodoNotebook.Dockerfile --tag bodo-notebook:latest .
[+] Building 454.8s (7/7) FINISHED
=> [internal] load build definition from BodoNotebook.Dockerfile 0.0s
=> => transferring dockerfile: 193B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/jupyter/minimal-notebook:latest 1.7s
=> [auth] jupyter/minimal-notebook:pull token for registry-1.docker.io 0.0s
=> [1/2] FROM docker.io/jupyter/minimal-notebook:latest@sha256:cfeab9b91dfce03d9be1683f9d4728860c30757c593f9b9277da4ce7d1a4e7f3 81.4s
=> => resolve docker.io/jupyter/minimal-notebook:latest@sha256:cfeab9b91dfce03d9be1683f9d4728860c30757c593f9b9277da4ce7d1a4e7f3 0.0s
=> => sha256:cfeab9b91dfce03d9be1683f9d4728860c30757c593f9b9277da4ce7d1a4e7f3 743B / 743B 0.0s
=> => sha256:e659268a4bcf642996a505b2c1b64ed3fadf94f2f0727eb732ea566e8c9ef8a8 11.64kB / 11.64kB 0.0s
=> => sha256:ea362f368469f909a95f9a6e54ebe0121ce0a8e3c30583dd9c5fb35b14544dec 28.57MB / 28.57MB 11.9s
=> => sha256:41fcd07744d8934e689ba82ac81c7b2eed3f46484802efdd5c423a07885fd785 3.04kB / 3.04kB 0.0s
=> => sha256:1c2cc406fa63e6931b0cfb124173fdcbea06809c6c42d4cfb25b8874b1463a1e 35.26MB / 35.26MB 17.0s
=> => sha256:669dbb3f63668a4c5a267e3083fe974cec496c9a97e74944529b45919cdc5f1e 684B / 684B 0.4s
=> => sha256:3923fd8d3607224bdebba09e8de3a3819a41e9bd0eab252513da33fbf6dc9d07 1.92kB / 1.92kB 0.8s
=> => sha256:d5da8a60f05b52ed80577aab05f648559b50873d90a47175cbc679a0f60aa6be 4.54kB / 4.54kB 0.9s
=> => sha256:78722f61450a56f31e00e788c283bc8abc244f98f4871fbf4b7a76627316c2f8 162B / 162B 1.2s
=> => sha256:92fcb4043b45484602772354f77af6a231181f6bd530b19244d38c8f55715211 87.35MB / 87.35MB 33.6s
=> => extracting sha256:ea362f368469f909a95f9a6e54ebe0121ce0a8e3c30583dd9c5fb35b14544dec 1.1s
=> => sha256:e43cca32fa728bd1bbec630a2230571fff2ee1be338ce20fc55e8615bfab9ff4 88.56MB / 88.56MB 43.0s
=> => sha256:d6e059957f764282e558930ce0479d40d0862c68d5139bbe7080624bfe4f69d3 4.00kB / 4.00kB 17.0s
=> => extracting sha256:1c2cc406fa63e6931b0cfb124173fdcbea06809c6c42d4cfb25b8874b1463a1e 1.7s
=> => sha256:d4c1ac4b2556b688d1ee8bc220981c24028a4f2bb0677bfb4fb97060a4929956 991B / 991B 17.2s
=> => sha256:662cec5dfc0cdd6056b55d2a62f1e5a84a15a4a1489e6caaab672c1e5e4124d1 1.07kB / 1.07kB 17.5s
=> => sha256:2c1cefff5d33968205bf89bb11cee87f4c944712ea62ecacb0f1201cc67f8665 235.96MB / 235.96MB 69.0s
=> => extracting sha256:669dbb3f63668a4c5a267e3083fe974cec496c9a97e74944529b45919cdc5f1e 0.0s
=> => extracting sha256:3923fd8d3607224bdebba09e8de3a3819a41e9bd0eab252513da33fbf6dc9d07 0.0s
=> => extracting sha256:d5da8a60f05b52ed80577aab05f648559b50873d90a47175cbc679a0f60aa6be 0.0s
=> => extracting sha256:78722f61450a56f31e00e788c283bc8abc244f98f4871fbf4b7a76627316c2f8 0.0s
=> => sha256:759c927f13aa8f4534dc633ddb6e49a2de8316a91b360d0a9b4b8a28e16576e1 1.47kB / 1.47kB 33.9s
=> => extracting sha256:92fcb4043b45484602772354f77af6a231181f6bd530b19244d38c8f55715211 3.9s
=> => extracting sha256:e43cca32fa728bd1bbec630a2230571fff2ee1be338ce20fc55e8615bfab9ff4 5.0s
=> => extracting sha256:d6e059957f764282e558930ce0479d40d0862c68d5139bbe7080624bfe4f69d3 0.0s
=> => extracting sha256:d4c1ac4b2556b688d1ee8bc220981c24028a4f2bb0677bfb4fb97060a4929956 0.0s
=> => extracting sha256:662cec5dfc0cdd6056b55d2a62f1e5a84a15a4a1489e6caaab672c1e5e4124d1 0.0s
=> => extracting sha256:2c1cefff5d33968205bf89bb11cee87f4c944712ea62ecacb0f1201cc67f8665 11.9s
=> => extracting sha256:759c927f13aa8f4534dc633ddb6e49a2de8316a91b360d0a9b4b8a28e16576e1 0.0s
=> [2/2] RUN conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge 364.3s
=> exporting to image 7.4s
=> => exporting layers 7.4s
=> => writing image sha256:e29c12b61ad24c167d27c4e2a17d4f0c9a3f513b131f20186735f0f1b4bbaa0d 0.0s
=> => naming to docker.io/library/bodo-notebook:latest 0.0s
From your logs, it seems like you didn't specify a Bodo Version in the conda install command in your Dockerfile.
Could you try doing this? Let us know if you face any issues.
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willyyang
commented on August 14, 2024
hey @sahil1105 thanks for the prompt response. Yes sorry I must've pasted incorrectly but still facing same issue.
docker build -f dockerfile . -t test
[+] Building 13.6s (5/5) FINISHED
=> [internal] load build definition from dockerfile 0.0s
=> => transferring dockerfile: 659B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/jupyter/minimal-notebook:latest 1.0s
=> CACHED [1/2] FROM docker.io/jupyter/minimal-notebook:latest@sha256:cfeab9b91dfce03d9be1683f9d4728860c30757c593f9b9277da4ce7d1a4e7f3 0.0s
=> ERROR [2/2] RUN conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge 12.6s
------
> [2/2] RUN conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge:
#5 0.732 Collecting package metadata (current_repodata.json): ...working... done
#5 2.979 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
#5 2.980 Collecting package metadata (repodata.json): ...working... done
#5 11.58 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
#5 11.58
#5 11.58 PackagesNotFoundError: The following packages are not available from current channels:
#5 11.58
#5 11.58 - bodo=2021.9
#5 11.58
#5 11.58 Current channels:
#5 11.58
#5 11.58 - https://conda.anaconda.org/bodo.ai/linux-aarch64
#5 11.58 - https://conda.anaconda.org/bodo.ai/noarch
#5 11.58 - https://conda.anaconda.org/conda-forge/linux-aarch64
#5 11.58 - https://conda.anaconda.org/conda-forge/noarch
#5 11.58
#5 11.58 To search for alternate channels that may provide the conda package you're
#5 11.58 looking for, navigate to
#5 11.58
#5 11.58 https://anaconda.org
#5 11.58
#5 11.58 and use the search bar at the top of the page.
#5 11.58
#5 11.58
------
executor failed running [/bin/bash -o pipefail -c conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge]: exit code: 1
This should be an exact c&p of https://github.com/Bodo-inc/Bodo-examples/blob/master/docker/BodoNotebook.Dockerfile
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willyyang
commented on August 14, 2024
And any feedback regarding the bodo pip installation then used in jupyterlab ? Fetching bodo 2021.10.1 via pip then running import bodo results in the above error.. Hoping that issue can be addressed, thanks.
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sahil1105
commented on August 14, 2024
And any feedback regarding the bodo pip installation then used in jupyterlab ? Fetching bodo 2021.10.1 via pip then running
import bodoresults in the above error.. Hoping that issue can be addressed, thanks.
Hi, this issue is due to the mpi4py_mpich version and should be resolved in the future versions of our pip package. Thanks for bringing it to our attention.
For now could you try it with pip install mpi4py-mpich==3.0.3 ?
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sahil1105
commented on August 14, 2024
hey @sahil1105 thanks for the prompt response. Yes sorry I must've pasted incorrectly but still facing same issue.
docker build -f dockerfile . -t test [+] Building 13.6s (5/5) FINISHED => [internal] load build definition from dockerfile 0.0s => => transferring dockerfile: 659B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/jupyter/minimal-notebook:latest 1.0s => CACHED [1/2] FROM docker.io/jupyter/minimal-notebook:latest@sha256:cfeab9b91dfce03d9be1683f9d4728860c30757c593f9b9277da4ce7d1a4e7f3 0.0s => ERROR [2/2] RUN conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge 12.6s ------ > [2/2] RUN conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge: #5 0.732 Collecting package metadata (current_repodata.json): ...working... done #5 2.979 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. #5 2.980 Collecting package metadata (repodata.json): ...working... done #5 11.58 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. #5 11.58 #5 11.58 PackagesNotFoundError: The following packages are not available from current channels: #5 11.58 #5 11.58 - bodo=2021.9 #5 11.58 #5 11.58 Current channels: #5 11.58 #5 11.58 - https://conda.anaconda.org/bodo.ai/linux-aarch64 #5 11.58 - https://conda.anaconda.org/bodo.ai/noarch #5 11.58 - https://conda.anaconda.org/conda-forge/linux-aarch64 #5 11.58 - https://conda.anaconda.org/conda-forge/noarch #5 11.58 #5 11.58 To search for alternate channels that may provide the conda package you're #5 11.58 looking for, navigate to #5 11.58 #5 11.58 https://anaconda.org #5 11.58 #5 11.58 and use the search bar at the top of the page. #5 11.58 #5 11.58 ------ executor failed running [/bin/bash -o pipefail -c conda install -y bodo=2021.9 ipyparallel -c bodo.ai -c conda-forge]: exit code: 1This should be an exact c&p of https://github.com/Bodo-inc/Bodo-examples/blob/master/docker/BodoNotebook.Dockerfile
Hmm, this is very weird. As you can see in my previous reply, the same thing worked on my machine, and the base image seems to be exactly the same as well. What type of machine are you using? It might be related to the CPU generation.
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willyyang
commented on August 14, 2024
Looks like the pip install fixed things, will give it more of a thorough test thanks!
As for machine running the docker build, I've tried on both a 2019 mac running big sur and M1 running Monterey.
Quick question regarding the channel used for installation, should this package be available -c conda-forge ? I'm asking because I'm going to need to run this through my company conda channel mirrors.
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ritwika314
commented on August 14, 2024
Hi @willyyang, thanks for the update! Would you be open to joining our community slack : https://join.slack.com/t/bodocommunity/shared_invite/zt-qwdc8fad-6rZ8a1RmkkJ6eOX1X__knA / to continue the conversation further there? Thanks!
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