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ab_qtl_mapping

AB_QTL_Mapping contains the R codes used for the analysis in the publication Mathew et al. (2021; G3): https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab105/6211194

adaptivemcmc

AdaptiveMCMC contains MATLAB code for the adaptiveMCMC method presented in Mathew et al. (2012; Heredity):: https://www.nature.com/articles/hdy201235

bayesian-multilocus

Bayesian-Multilocus contains R code for Bayesian Multilocus Estimation of two and three way epistasis presented in Mathew et al. (2018;Genetics):: https://www.genetics.org/content/208/2/525

coursera-project

Python scripts used for the coursera project.

f4-sim

C codes to simulate a F4 population based on infinite locus model and for the Bayesian estimation of breeding values. This was developed as a part of my PhD thesis: https://bonndoc.ulb.uni-bonn.de/xmlui/handle/20.500.11811/5102

inla-cv

INLA-CV contains R code for Integrated nested Laplace approximation (INLA) inference presented in Mathew et al. (2015; Molecular Breeding):: https://link.springer.com/article/10.1007/s11032-015-0248-y

met-analysis

MET-analysis contains R code used in Mathew et al. (2018; PLOS ONE):: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0201181

multivariate-inla

Multivariate INLA contains R code for the Integrated nested Laplace approximation inference (INLA) of multivariate mixed model presented in Mathew et al. (2016; Theoretical and Applied Genetics):: https://link.springer.com/article/10.1007%2Fs00122-015-2622-x

novel-gblup

Novel-GBLUP contains R code for the calculation of linkage-disequilibrium corrected genomic relationship matrix presented in Mathew et al. (2018; Heredity):: https://www.nature.com/articles/s41437-017-0023-4

r-course

R-Course contains the data sets and materials of the course "R Programming" given as a part of the graduate school at university of Bonn

rpharma2020

R/Pharma Conference 2020. Repository for the workshop "Artificial Neural Networks in R with Keras and TensorFlow" by Leon Eyrich Jessen

rpharma2021-workshop

Materials for the safetyGraphics R Phama 2021 Workshop

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