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Name: Brad Nelson
Type: User
Company: @phasegenomics
Bio: Senior Data Scientist
Location: Seattle, WA
Name: Brad Nelson
Type: User
Company: @phasegenomics
Bio: Senior Data Scientist
Location: Seattle, WA
Fastq to bam mapping pipeline with marked duplicates, indexing, and insert size metric collection
Pipeline for generating SUNK pileups from clone sequence data
Scripts for processing data using conifer
Using empirical data to inform branch-length priors for Bayesian phylogenetics
LCaDRE: Library Complexity and Duplication Rate Estimation
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
Simple mrsfast read depth mapping using snakemake
a legacy repo to avoid breaking existing pipelines
Assessing model fit using posterior prediction
Simple stand-alone programs for analysis of aligned Multi-FASTA formated files.
Code for getting read depth-based copy number for a custom contig
Get genotypes for regions using WSSD and SUNK
Pipeline based on phylogenetic methods in Sudmant et al. 2015 (SGDP)
Quickly search, compare, and analyze genomic and metagenomic data sets.
scale space filtering based CNV calling and genotyping
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Variation Hunter pipeline using snakemake
Calculate Vst statistics for populations
Legacy codebase for WSSD and SUNK read depth file creation and analysis
Snakemake pipeline for running XHMM
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.