Comments (5)
Apologies, the backend mongo database shutdown and needed to be restarted. The system should be available now.
from grip.
Sorry for the late response. I will give this another shot soon, along with my other posted issue. Are you the appropriate contact person to reach out to regarding questions on the BMEG initiative. My team at Tufts CTSI are interested in learning more about it (the incorporation of pathway commons in particular) and may want to contribute if it's appropriate.
from grip.
Yes, I lead the project.
GRIP is our query engine. It's designed to be a general purpose graph query engine that can plug into external data resources. BMEG is a specific graph build, largely concentrating on cancer related genomic, drug response and knowledge base resources. It is built from the scripts found in https://github.com/bmeg/bmeg-etl
You can read about some of the scientific goals at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7049249/
from grip.
Thanks! I haven't seen this article, I will give it a read. My team may reach out in the near future. Is there a preferred line of communication?
from grip.
Email works: ellrott at ohsu dot edu
from grip.
Related Issues (20)
- Python client refactor - duplicated code
- Master Branch failing lint: gripql/javascript/gripqljs.go
- Aggregation Docs outdated
- Badly configured Mongo Driver seems to lock HOT 1
- Code linter has been deprecated HOT 1
- RocksDB build is broken HOT 2
- Duplicate vertex selection behavior
- Queries that are used to return non-empty results are returning empty HOT 2
- Grip crashes with OOM error HOT 2
- R client: within and without are missing an argument
- Date Type
- python client has hard-coded logLevel HOT 1
- "Getting Started" example not working as expected HOT 1
- log request header in debug
- When auth not configured, add warning message to server log
- Add authentication to CLI client
- Aggregation Errors lead to locked processors
- Add HTTP support to command line tool
- Add option for HNSW indexing of vectors
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from grip.