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Biomedical Data Science group's Projects

crackling icon crackling

CRISPR, faster, better – The Crackling method for whole-genome target detection

crackling-phased icon crackling-phased

CRISPR, faster, better – The Crackling method for variant-aware, whole-genome target detection

crispr-benchmark icon crispr-benchmark

Supplementary data for "A Benchmark of Computational CRISPR-Cas9 Guide Design Methods"

dmi icon dmi

Algorithm for module identification in biological networks

k562 icon k562

Identification of allele-specific CRISPR targets in the K562 cell line.

mm10db icon mm10db

Whole-genome CRISPR target detection, implementing the method described in Sunagawa et al., "Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene", Cell Reports 14(3)662-677, 2016

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