Comments (6)
At the moment this feature is implemented as the difference between the time of the peak and the start of the spike (using the respective features to calculate these):
aprisetime[i] = t[peakindices[i]] - t[apbeginindices[i]]
With the 10-90% do you mean the voltage is at 10-90% of the AP amplitude?
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For example, say that the AP_begin_voltage occurs at 0mV and the peak_voltage is 100mV. Instead of calculating the full rise time (0 - 100), is there a way to calculate the time it takes to rise from 10% to 90% of the voltage?
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Unfortunately I don't think we have a feature that can be used for that. It could be implemented, I only wonder how we should parametrize it. I assume we don't want to fix the 10%-90% levels
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I would agree with the last statement. According to a more experienced colleague, the calculations relating to rise time are variable (10-90%, 20-80%, etc.). Would it be possible to include both rise_begin_perc and rise_end_perc as global settings that can be modified by the user similar to interp_step and voltage_base_start_perc?
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@AurelienJaquier or @anilbey Could you have a look at adding this to the feature? The default should be the old behavior. Thanks.
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This issue should have been solved with PR #198
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Related Issues (20)
- postburst_min_values (and interburst_min_values) - don't work as expected - fast AHP after last spike in burst reported instead of slow AHP. HOT 8
- Creating a new feature for decay_time_constant_multiple_steps HOT 1
- Possible speed up? HOT 9
- coverage is not measuring the python code
- Feature naming, adaptation_index, adaptation_index2
- Inconsistent Handling of Missing Values and Edge Cases Compromises Scientific Results HOT 1
- Can't install efel on macos sonoma HOT 3
- Hyperlinking features in the docs HOT 3
- generic features like inv_sixth_ISI in Python API
- DOCS: missing documentation for `LibV5::is_not_stuck`
- "number_initial_spikes" feature should return 0 when there are no spikes instead of None HOT 1
- AP_begin_indices seems to be disturbed by spontaneous firing HOT 4
- efel/cppcore/LibV3.cpp:32:38: warning: unused parameter ‘stimstart’
- Bug in single_burst_ratio, first 2 spikes are ignored
- E-feature request: time_constant_AP1 and subthreshold_time_constant
- address type issues in api.py HOT 1
- check if any None in feature_values in api.py HOT 4
- Auto changelog from the git history?
- Difficulty in Detecting AP_begin_voltage in Rheobase Simulations HOT 7
- Issue with min_AHP_indices Detection HOT 1
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