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agrep

AGREP - approximate GREP for fast fuzzy string searching. Files are searched for a string or regular expression, with approximate matching capabilities and user-definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona. ISC open source license since Sept. 2014.

alimanfoo.github.io

Alistair Miles' blog

awesome-pangenomes

A list of software for pangenomics

bioconda-recipes

Conda recipes for the bioconda channel.

catch

for bioconda recipe, based on open source code from https://science.sckcen.be/en/Institutes/EHS/MCB/MIC/Bioinformatics/CATCh

crop

CROP: Clustering 16s rRNA for OTU Prediction

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

flashmasta-slot1-save-converter

Converts WonderSwan Saves so that they can be imported into and used by a "Flash Masta" Flashcart.

gfatypes

hardware-target-game-database

Flash-cart optimized file and folder layouts.

jvarkit

Java utilities for Bioinformatics

ncbitaxonomy

Tools to build a copy of the NCBI Taxonomy database in a local SQL schema and query it via a Java package.

pangraphs

Does pangenome graphs visualisation (sort of)

pycharm-jenkinsfile

PyCharm Jenkinsfile highlighting

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

strobemers

A repository for generating strobemers and evalaution

suspend_fix_13-v001nf

HP Spectre 13 (vnf001 or 13-V001NF) not going in sleep/suspend under Linux.

todolist_resources

Resource files bundled with ToDoList

ws-cartfriend

Flashcart debugging menu for homebrew development.