Comments (2)
We do not currently support ESM-style ":" tokens, but internally in ESMFold they are converted to linker sequences, which you can add manually. See https://github.com/facebookresearch/esm/blob/main/esm/esmfold/v1/misc.py#L18.
In the future we may add direct support for multimer inputs.
from alphaflow.
Thanks, I will try that solution for now.
from alphaflow.
Related Issues (20)
- Diffuse selected residues
- Issues with CUDA12 and or G++17 HOT 2
- Command options' help messages in predict.py missing HOT 1
- Appropriate `model_config` arguments for initial training upon predicting with long sequence HOT 2
- Generating Abnormal PDB results HOT 2
- missing scripts.prep_atlas.py file HOT 1
- The size of tensor a (184) must match the size of tensor b (183) at non-singleton dimension 1 HOT 1
- Availability of MD Ensemble Evaluation Scripts HOT 2
- Training with PDBs HOT 1
- The distance between adjacent alpha carbons is not 3.8 A from the Prior HOT 1
- when traing alphaflow from scratch, show AttributeError: 'AlphaFoldWrapper' object has no attribute 'extra_msa_stack' HOT 3
- predict.py does not run AttributeError: module 'numpy' has no attribute 'object'.
- Diffusion scheduling code making abnormal protein output HOT 1
- Alphaflow not working. HOT 8
- Is biopandas needed? HOT 1
- alphaflow not working -- keyError: 'ptm' HOT 1
- RuntimeError: view size is not compatible with input tensor's size and stride (at least one dimension spans across two contiguous subspaces). Use .reshape(...) instead.
- CA filtering in the evaluation code
- Request to update Dockerfile
- Is 3.8 A the right value for projected C-beta coordinates?
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from alphaflow.