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Name: BioUno
Type: Organization
Bio: Continuous Integration tools and techniques applied in Bioinformatics
Blog: http://www.biouno.org
Name: BioUno
Type: Organization
Bio: Continuous Integration tools and techniques applied in Bioinformatics
Blog: http://www.biouno.org
Tools for working with second gen assemblies, fasta sequences, etc
Update center backend
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. We include a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.
Legacy BioJava Code
Experimentations with BioJava
A library of JavaScript components to represent biological data
Data for bioinformatics tools, including input, parameters, and other files
A Maven repository for BioUno plug-ins
BioUno web site
High-performance dynamic IIIF image server in Java
Examples showing how to use CMake
Adds SPARQL connectivity to the database plugin
Distruct plug-in for Jenkins
Java implementation for DRMAA applications
DRMAA PBS Java API, using command executions like qsub and qstat
Reference implementation of the DRMAAv2 C Language Binding
Jenkins-CI plugin allowing dynamically generated build parameter default values
A Java API to interface with the FigShare API.
BioUno FigShare Plug-in
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so may not be as polished and feature-complete as a commercial program. In particular it is designed to display summarized and annotated trees produced by BEAST.
Code snippets to calculate genetic differentiation in R. See posting at: XXXX
Scala library for accessing various file, batch systems, job schedulers and grid middlewares.
IIIF Website, contexts, and source of specifications documents
Jenkins Plug-in for displaying galleries of images from a job workspace
Examples for Jenkins
Jenkins for Life Science Continuous Integration
Useful groovy scripts that can be used while using Jenkins-CI for workflow automation
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.